PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000616.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 172aa    MW: 19172.9 Da    PI: 9.4315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000616.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000824567123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C k F++   L  H  +H
  Itr_sc000616.1_g00014.1 45 FECKTCQKKFKSFQALGGHRASH 67
                             89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.31E-645108No hitNo description
PfamPF139123.6E-104569IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1594572IPR007087Zinc finger, C2H2
SMARTSM003550.24567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.6E-985110IPR007087Zinc finger, C2H2
SMARTSM003550.1986108IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.41186113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTLKRSREEV AAEAEALAMA NCLVLLSRPA SGGAAGKTPP SGWEFECKTC QKKFKSFQAL  60
GGHRASHKRP KHLEHNNNNV NIKKRHECPV CGLEFGLGQA LGGHMRKHRA HQSHSDDKKS  120
PDLLTVTTLE NEEHSAGIKK KNEVLFDLNF TLLENDSIVH RRFVPTTLDL FV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-29C2H2 family protein